Package: coMMpass
Title: MMRF CoMMpass Data Analysis Pipeline
Version: 0.1.0
Authors@R: person("John", "Gavin", email = "john.gavin@example.com", role = c("aut", "cre"))
Description: A reproducible data acquisition and analysis pipeline for
        the MMRF CoMMpass study using Targets and Nix.
License: MIT + file LICENSE
URL: https://JohnGavin.github.io/coMMpass-analysis/,
        https://github.com/JohnGavin/coMMpass-analysis
BugReports: https://github.com/JohnGavin/coMMpass-analysis/issues
Encoding: UTF-8
RoxygenNote: 7.3.3
VignetteBuilder: quarto, knitr
Imports: TCGAbiolinks, S4Vectors, SummarizedExperiment, edgeR, logger,
        dplyr, aws.s3, arrow, DBI, duckdb, dbplyr, cli, jsonlite, glue,
        stringr, tibble
Suggests: anndataR, AnnotationDbi, SingleCellExperiment, apeglm,
        quarto, targets, tarchetypes, crew, DESeq2, fgsea,
        GenomicDataCommons, ggplot2, limma, msigdbr, org.Hs.eg.db,
        scales, survival, tidyverse, knitr, rmarkdown, pkgdown,
        testthat (>= 3.0.0), gert, gh, nanoparquet, DT, htmltools,
        plotly, plumber, visNetwork, here, dagitty, ggdag, naniar,
        brms, bayesplot, posterior, splines2
biocViews: Software
Additional_repositories: https://bioc.r-universe.dev
Config/testthat/edition: 3
Config/pak/sysreqs: cmake libicu-dev libpng-dev libxml2-dev libssl-dev
        libx11-dev xz-utils zlib1g-dev
Repository: https://johngavin.r-universe.dev
Date/Publication: 2026-07-12 10:34:58 UTC
RemoteUrl: https://github.com/JohnGavin/coMMpass-analysis
RemoteRef: HEAD
RemoteSha: c6cb45c5116432bb1339c8732e863c96603adb87
NeedsCompilation: no
Packaged: 2026-07-12 11:51:06 UTC; root
Author: John Gavin [aut, cre]
Maintainer: John Gavin <john.gavin@example.com>
Depends: R (>= 4.1.0)